Castilla y Leon Supercomputing Center
  • 1. HPC. User guides
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    • Installed software
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  • 2. Virtualization. User guides
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  • 3. OpenCAYLE. User guides
    • S3 Storage Service
      • OpenCAYLE service connection
      • Uso del servicio con rclone
      • Use of service with Python
      • Use of service with graphic interface (S3Browser)
      • Use of service from the command line (s3cmd)
      • OpenCAYLE statistics
    • Data publication
      • Access to Opencayle publication
      • User Dashboard
      • How to create a publication
      • How to update a publication
      • How to delete a publication
    • How to use OpenCayle on HPC environment
  • 4. Terms of use and safety regulations
  • 5. Password management
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HPC. User guides Installed software
  • Español
  • English

Installed software

  • A
    • ABINIT
  • B
    • bamtofastq
    • BayeScan
    • BEAGLE
    • BLAS
    • Boost
    • Bowtie
    • Bowtie 2
    • BWA
  • C
    • Cassandra
    • CMake
  • D
    • Dask
    • DIYABC
  • E
    • Eigen
    • EnTap
  • F
    • FastQC
    • FFmpeg
    • FFTW
  • G
    • GCC
    • GDAL
    • Genepop
    • GMP
    • GREASY
  • H
    • HDF5
    • HISAT2
  • I
    • Intel Parallel Studio XE
  • J
    • JDK
    • JELLYFISH
    • Julia
  • K
    • Kallisto
  • M
    • MDynaMix
    • MPICH
    • mothur
  • N
    • NAMD
    • Nektar++
    • NetCDF
    • NGSReadsTreatment
  • O
    • Octave
    • OpenFOAM
    • Open MPI
    • ORCA
  • P
    • Perl
    • PhyloNet
    • Picard
    • Plink
  • Q
    • Quantum ESPRESSO
    • QIIME 2
    • QTLMap
  • R
    • R
    • RSEM
  • S
    • Salmon
    • SAMtools
    • SIESTA
    • Singularity
    • Smilei
    • SPAdes
    • SqueezeMeta
    • Stacks
    • STAR
    • Structure
    • SU2
    • Subread
  • T
    • TopHat
    • Trimmomatic
    • Trinity
  • W
    • WRF

The list of programs available to all Caléndula users is detailed below. If the software you need for your work is not currently installed, please contact our Technical Department to request its installation.

A

ABINIT

B

bamtofastq

BayeScan

BEAGLE

BLAS

Boost

Bowtie

Bowtie 2

BWA

C

Cassandra

CMake

D

Dask

DIYABC

E

Eigen

EnTap

F

FastQC

FFmpeg

FFTW

G

GCC

GDAL

Genepop

GMP

GREASY

H

HDF5

HISAT2

I

Intel Parallel Studio XE

J

JDK

JELLYFISH

Julia

K

Kallisto

M

MDynaMix

MPICH

mothur

N

NAMD

Nektar++

NetCDF

NGSReadsTreatment

O

Octave

OpenFOAM

Open MPI

ORCA

P

Perl

PhyloNet

Picard

Plink

Q

Quantum ESPRESSO

QIIME 2

QTLMap

R

R

RSEM

S

Salmon

SAMtools

SIESTA

Singularity

Smilei

SPAdes

SqueezeMeta

Stacks

STAR

Structure

SU2

Subread

T

TopHat

Trimmomatic

Trinity

W

WRF