QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results.
Key features:
Integrated and automatic tracking of data provenance.
Semantic type system.
Plugin system for extending microbiome analysis functionality.
Support for multiple types of user interfaces (e.g. API, command line, graphical).